CDS

Accession Number TCMCG065C25094
gbkey CDS
Protein Id XP_004976180.1
Location complement(join(24574737..24574905,24575126..24575240,24575758..24576109,24576257..24576586,24576998..24577270,24577367..24577825,24579116..24579325,24579426..24579637,24580911..24581011,24581363..24581787,24581871..24582145,24582225..24582490,24582571..24582777,24582927..24583087,24583208..24583400,24584609..24584702,24584921..24585061,24586251))
Gene LOC101767266
GeneID 101767266
Organism Setaria italica

Protein

Length 1327aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA207554
db_source XM_004976123.3
Definition endoribonuclease Dicer homolog 4 isoform X2 [Setaria italica]

EGGNOG-MAPPER Annotation

COG_category A
Description Belongs to the helicase family. Dicer subfamily
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K11592        [VIEW IN KEGG]
EC -
KEGG_Pathway ko05206        [VIEW IN KEGG]
map05206        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0002252        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003002        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004519        [VIEW IN EMBL-EBI]
GO:0004521        [VIEW IN EMBL-EBI]
GO:0004525        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006353        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006955        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0007389        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009615        [VIEW IN EMBL-EBI]
GO:0009616        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009798        [VIEW IN EMBL-EBI]
GO:0009888        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009943        [VIEW IN EMBL-EBI]
GO:0009944        [VIEW IN EMBL-EBI]
GO:0009955        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010050        [VIEW IN EMBL-EBI]
GO:0010073        [VIEW IN EMBL-EBI]
GO:0010074        [VIEW IN EMBL-EBI]
GO:0010216        [VIEW IN EMBL-EBI]
GO:0010267        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010492        [VIEW IN EMBL-EBI]
GO:0010599        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016246        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016442        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016891        [VIEW IN EMBL-EBI]
GO:0016893        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0019827        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030422        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0031332        [VIEW IN EMBL-EBI]
GO:0032296        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0035821        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0044003        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044403        [VIEW IN EMBL-EBI]
GO:0044419        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045087        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048507        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051214        [VIEW IN EMBL-EBI]
GO:0051607        [VIEW IN EMBL-EBI]
GO:0051701        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0051817        [VIEW IN EMBL-EBI]
GO:0052018        [VIEW IN EMBL-EBI]
GO:0052249        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065001        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090502        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:0098586        [VIEW IN EMBL-EBI]
GO:0098727        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCAGGCTGCAAGGACCTTTCTATCTTCTGGTGGTGGTAGTCTTGATAGAAAGGGGTTTGACATAAATGACAATCATGCCAGTTTTGTACAGCACTATCTACACAAAGCAATTTCTCTTCTAAGCTGCGACATATTAGATGGTGCTGATGCTGATTCTGTTGATCTGGAGACACTGGAGGAACCTTTATTCTCAAAAAAATTTGCAGTTCTTATTGACGTTCTGTCAAGATACAGGCTAGAGGAAAACATGAAGTGCATTGTTTTTGTGAAAAGAATCATTGTCGCAAGAGTAATCTCACATATTCTCCAAAACCTGAAGTGCCTTGATTTCTGGAAATGTGAGTGTCTTGTGGGATGCCACTCAGGATTGAAGAACATGTCAAGGAACAAGATGGGTTCTATCATTGAAAAGTTCTCTTCGGGTGAGGTGAACCTTTTGGTTGCTACTAGTGTAGGTGAGGAGGGACTTGACATTCAGACATGCTGCCTTGTTGTGCGGTTTGATCTCCCAGAAACTGTTTCTAGCTTTATCCAGTCAAGGGGACGTGCCCGGATGAGTAAATCTAAATACATTTTCCTCCTGGAGAGGGGAAACCAATCTCAGGAGAAGTTGCTTGGTGATTATATTACTGGCGAAAGTATTATGGATAAAGAGGTTAACTTGAGAACTTCAAATGATATGTTCGATTCCCTTGAGGAGAACATCTATCGAGTGAACAACACTGGTGCTTCCATTAGCACTGCTTGCAGTGTATCTCTATTACATTGCTATTGTGACAACCTTCCAAGAGATAGGTTTTTTTTTCCTTCTCCATCATTCTTCTATGTTGATGATGTTGAAGGAATAGTCTGCAGACTAATTCTCCCACCAAATGCTGCTTTTCGTCAAGTGAACAGTCAACCCTGTCCATCAAAAGATGAAGCTAAGAGAGATGCATGCTTGAAAGCATGCATAAGACTTCACGAACTGGGTGCTTTGACAGATTTTCTTCTGCCGGGCCAAGGCTCTAGAAAGACTAAGGTATCAACAACAGATATATTAGAAAGCAACAAAGCTGAGGATGAAAGTTTTAGGGAAGAACTTCATGAGATGTTGGTTCCTGCAGTTCTGAGATCTTCAAGATACAAACTGGACTGTTTGTTGAACTTGCATTTCTACTACATAGAATTTATTCCCAAACCAGCAGATAGACGATATCAGATGTTTGGTCTTTTTGTGATCGATGCCCTTCCAAAGGAAGCTGAAAAGTTGGATGTTGAATTGCATCTTGCACGTGCGAGGATTGTGAAAGCAGGAATTAAATATTTGGGAATGATTACTTTTAACAAAGAGGAGATGATGCTCGCACACAATTTCCAAGAAATGTTTTTGAAAGTTCTCTTGGACAGATCTGAGTTCACTTCATCTTATGTTATGTTGGGGAATGATACTGCGTTTCAAATGGATTCAACATTTTACCTGTTGCTTCCCATCAAACAGAAATTCTATGGTGATAAATTTATTATTGATTGGCCAGCAGTAAAGCGGTGCTTATCATCACCTGTATTTCAAGATCCAACGAGTTTATCTCTGCATGACTCATATTTGCCAAATGAGTCTTTGAAGCTTCTTGACGGAACATACAGTAAAGCTGATGTGATTGGCAGTTTGGTCTTCACTCCCCACAACAACCTGTTTTTCTTCGTTGATGACATTCTGGATGAAATAAATGGTAAAAGTGAATTCAACGGTGCAACTTATGCAGCACATTTTGAGGAAAGGTTTGATATCGAGCTATCCCATCCTGAACAGCCATTTTTGAGAGCAAAACAACTCTTCAATCTACGCAATCTGCTGCATAACCGACAACAAGAGAGCACAGAATCCGAGGGCCGTGAATTGATGGAGCACTTCGTGGAGTTACCTCCAGAGCTATGCTCTTTGAAGATAACTGGGTTCTCAAAAGATATGGGTAGTTCTTTGTCCTTGCTACCGTCTTTAATGTGTCACTTGGAGAATTTGTTGGTGGCTCTCGAGTTGAAGGATGTCATGTTATCTTATTTCCCAGAGGCTTCTCAAATTAGTGCTTCTGGTATCCTTGAAGCGCTGACTACTGAAAGGTGTTTGGAGAGGATCTCGTTGGAGCGATTTGAAGTCCTAGGTGATGCTTTCTTGAAGTATGTAGTTGGGCGCCATAACTTTATTTCATATGAAGGACTTGATGAAGATCAGTTGACCAGGAGACGTTCTGATATAGTGAATAATTCAAATTTATATGAGTTATCAATTAGAAGAAATTTGCAGGTATACATACGGGATCAACAGTTTGAACCTACTCAGTTCTATGCACTGGGAAGGCCATGTAAGGTGGTTTGCAATCCTGAAACAGAAGCGAGTTTACACCCGAAGAATATCGACCCAGATAAGCGAGACAACTGTAACTTGAGGTGTACAAAGTCACATCATTGGTTGCATAGAAAGACGATTGCAGATGTTGTTGAGTCACTTCTTGGAGCATTTATTGTTGAGAGTGGATTCAAAGCTGCATTTGCATTCCTAAATTGGATGGGAATAAATGTTGATTTTAAAGATGATGCTCTCTATAGAGTATTAGACGCAAGCTCGGCCAATTTGTCTCTCATGGATTACATCAACATTTCTGAGCTTGAAGAATTGATAGGTTACAAATTCAAGCACAAGGGTTTACTTCTCCAAGCATTTGTACACCCTTCATTCAATAAACATTCTGGAGGATGCTACCAGAGGATGGAGTTCCTTGGAGATGCTGTTTTGGAATATTTGATGGTCTCATACCTCTACTCTGCTTACCCAGATCTCAAGCCTGGTCAAATAACAGATCTGAAATCATTAGCTGTCAATAACACTTCATTTGCTTATGTAGCAATTAAGAAATCTATGCATAAGTATCTTATAAAGGATTCTAAATATCTTATGGCAGCGGTAAATAAATTTGAGAATTATTTTAATCTTTCCAATTCAGAGAAAGATTTGTCAGAAGAACCAGCATGTCCAAAGGTTCTTGGTGATATTGTTGAATCTTGTGTTGGTGCAGTGCTTTTAGATTCCGGCTTCAACCTGAACCATGCTTGGAAGCTAATGCTAATGCTTCTAAAGCCAATATTGAGCTTCTGTGACATGCACATAAATCCTCTGAGAGAACTCCGTGAACTTTGTCAATGTAATGGTTTTGACTTAGGCCTTCCCAAACCTATTAAGGCTGATGGAGAGTTCCATGTCAAAGTGGAAGTTAACGTAAACGGCAAGATGATAAGTTGTACAGCAGCAAACCAGAATTCAAAACACGCTAGAAAGTTGGCTGCACAAGATACACTTTCTAAACTGAAGAATTATGGATACAAGCATAAGAGCAAATCACTGGAGGAGATTTTGCGTACTGCCACAAAAAAAGAACCAGAATTAATAGGCTATGATGAAGAACCAATCAAAGTTGATGGTGTACCTTTAGAAATGAAGAATCTACAGATGAATGGAGAAATGGAGGAAAACATCTTTTTTGGAAATAATGAAGCATTTTTCATTGGGAGGTCTGCAACCTCCATTCAGAGAACAGGAGAAGACAACAAGGTTGACAGGAATGATGCCAATAATGGAAGGATCAATAAGTCCAATGTGGTTACGCAGAATGGTTGTCTACCTAGAGGGGAAGCTGCTAAAATAAACAAAAAAGAGTATCATGGTGATATGGTACACAAAACAGCAAGGTCATTCCTTTATGAACTATGTGCTGCAAACTATTGGAAACCTCCTGAATTTGAGTTATGCAAAGACGAAGGACCAAGTCACCTTCGAAAGTTCACTTGCAAGGTCCTTGTTCAGATCATGGGACCTTCAGCGACTCTTTTGGAGTGCTACAGCGATCCCAAGCTACAAAAGAAAGCCGCGCAGGAGCATGCCGCCCAGGGGGCTCTCTGGTGCCTCAAGCAACTTGGATACCTCCCAAAAGATGAAACTCATGTCTAG
Protein:  
MQAARTFLSSGGGSLDRKGFDINDNHASFVQHYLHKAISLLSCDILDGADADSVDLETLEEPLFSKKFAVLIDVLSRYRLEENMKCIVFVKRIIVARVISHILQNLKCLDFWKCECLVGCHSGLKNMSRNKMGSIIEKFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVSSFIQSRGRARMSKSKYIFLLERGNQSQEKLLGDYITGESIMDKEVNLRTSNDMFDSLEENIYRVNNTGASISTACSVSLLHCYCDNLPRDRFFFPSPSFFYVDDVEGIVCRLILPPNAAFRQVNSQPCPSKDEAKRDACLKACIRLHELGALTDFLLPGQGSRKTKVSTTDILESNKAEDESFREELHEMLVPAVLRSSRYKLDCLLNLHFYYIEFIPKPADRRYQMFGLFVIDALPKEAEKLDVELHLARARIVKAGIKYLGMITFNKEEMMLAHNFQEMFLKVLLDRSEFTSSYVMLGNDTAFQMDSTFYLLLPIKQKFYGDKFIIDWPAVKRCLSSPVFQDPTSLSLHDSYLPNESLKLLDGTYSKADVIGSLVFTPHNNLFFFVDDILDEINGKSEFNGATYAAHFEERFDIELSHPEQPFLRAKQLFNLRNLLHNRQQESTESEGRELMEHFVELPPELCSLKITGFSKDMGSSLSLLPSLMCHLENLLVALELKDVMLSYFPEASQISASGILEALTTERCLERISLERFEVLGDAFLKYVVGRHNFISYEGLDEDQLTRRRSDIVNNSNLYELSIRRNLQVYIRDQQFEPTQFYALGRPCKVVCNPETEASLHPKNIDPDKRDNCNLRCTKSHHWLHRKTIADVVESLLGAFIVESGFKAAFAFLNWMGINVDFKDDALYRVLDASSANLSLMDYINISELEELIGYKFKHKGLLLQAFVHPSFNKHSGGCYQRMEFLGDAVLEYLMVSYLYSAYPDLKPGQITDLKSLAVNNTSFAYVAIKKSMHKYLIKDSKYLMAAVNKFENYFNLSNSEKDLSEEPACPKVLGDIVESCVGAVLLDSGFNLNHAWKLMLMLLKPILSFCDMHINPLRELRELCQCNGFDLGLPKPIKADGEFHVKVEVNVNGKMISCTAANQNSKHARKLAAQDTLSKLKNYGYKHKSKSLEEILRTATKKEPELIGYDEEPIKVDGVPLEMKNLQMNGEMEENIFFGNNEAFFIGRSATSIQRTGEDNKVDRNDANNGRINKSNVVTQNGCLPRGEAAKINKKEYHGDMVHKTARSFLYELCAANYWKPPEFELCKDEGPSHLRKFTCKVLVQIMGPSATLLECYSDPKLQKKAAQEHAAQGALWCLKQLGYLPKDETHV